Insertion junction: CLIP2.076984_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.076984
Chromosome:plastome
Location:1617
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802263 ChreCp001,2716989,petA (1 of 1) K02634 - apocytochrome f (petA); apocytochrome f precursor CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGGTAAAACAGCTTGTGGTACTTCGATTTCAACTGCTTTTTGCGCTAAG
Internal bar code:TAACGTTTGGTTCGGAAACGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:231
LEAP-Seq percent confirming:54.5455
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:TTGCACTTTCCTCGTACCCG
Suggested primer 2:ACCACGACCACGATTACCAC