Insertion junction: CLIP2.077029_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.077029
Chromosome:chromosome 12
Location:3443444
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g497500 SNE7 (1 of 8) PTHR10366:SF411 - HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173 PROTEIN; Cinnamoyl-CoA reductase/flavanone 4-reductase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCAGCACAGCTGCGGGGGAGGGTGGCAGGATGTGCTAACCAAGGCGAACG
Internal bar code:CCGTTTGTGAGATGTACAGGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1893
LEAP-Seq percent confirming:96.6667
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:ATTGTGTCTGACGAGCTGGG
Suggested primer 2:CACGCATACATGGTGGCAAG