Insertion junction: CLIP2.077041_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.077041
Chromosome:chromosome 16
Location:546609
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g692500 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GATTGCGGAAGGATTAGACGGCTGTTGCGCGTGCGTCAGCACGGATGGTG
Internal bar code:TGAGGCCCGTCGTTAGCTTAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2157
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:CCGTCCTTGCAGGGAAGATT
Suggested primer 2:GGTGTATCGTGCGTACCGAT