Insertion junction: CLIP2.077200_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.077200
Chromosome:plastome
Location:30913
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802279 rps8,2716952 30S ribosomal protein S8; (1 of 1) PTHR11758//PTHR11758:SF17 - 40S RIBOSOMAL PROTEIN S15A // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGAAGGTCTAATGACTGATCGTGAAGCTCGTCTACGTGGTATTGGTGGT
Internal bar code:CGGGAAAAGGAGGAGTACCGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:126
LEAP-Seq percent confirming:35.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:TCTTTTGCAGTCGCCTTCCA
Suggested primer 2:TGCAGGAGTTTAACGAGCGT