Insertion junction: CLIP2.077211_4

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.077211
Chromosome:plastome
Location:96636
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802305 2716992,ChreCp041,rpoB2 (1 of 2) K03043 - DNA-directed RNA polymerase subunit beta (rpoB); RNA polymerase beta subunit II CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCTACGATAATATTATGTCCAATAGCTAATTCACCTCCAATACTTGAAG
Internal bar code:GGATCTCGCGAGCCCTCTGGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:169
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:AGATGTGACGCAGCCTTGAA
Suggested primer 2:TCAACAGCAGCTCCATCTGG