Insertion junction: CLIP2.077213_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.077213
Chromosome:chromosome 12
Location:5964527
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g533950 COT1 Cobalt transport protein; (1 of 1) PTHR33514//PTHR33514:SF3 - FAMILY NOT NAMED // PROTEIN ABCI12, CHLOROPLASTIC 3'UTR
Cre12.g534000 (1 of 58) PTHR12393//PTHR12393:SF6 - SPHINGOMYELIN PHOSPHODIESTERASE RELATED // SPHINGOMYELIN PHOSPHODIESTERASE 2 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGCGGGTTGGGGTGTTTGTGCATGCGCGTATGTTGGAGGTGGCAATCG
Internal bar code:TGACTGGCTCTTTCAACATTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:2607
LEAP-Seq percent confirming:97.2973
LEAP-Seq n confirming:72
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:74

Suggested primers for confirmation by PCR

Suggested primer 1:AAGAGTGAGCCAAGTCGGTG
Suggested primer 2:TCCTGGATCAGTTGCGGAAC