Insertion junction: CLIP2.077249_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.077249
Chromosome:chromosome 12
Location:2191088
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g509200 (1 of 1) PF00722//PF03935 - Glycosyl hydrolases family 16 (Glyco_hydro_16) // Beta-glucan synthesis-associated protein (SKN1) (SKN1); weakly Similar to Beta-Glucan Synthesis-Associated 3'UTR
Cre12.g801375 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGCTGTCTCACCATGTCACACTACCAGTCTCACACGCGCAGTATCGCAC
Internal bar code:GCGTCGCAAAGACAGGAAGGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:528
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CTTTATTAAGCGGGCGTGGC
Suggested primer 2:TGGAGCTGCTGAACAAGGAG