Insertion junction: CLIP2.077274_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.077274
Chromosome:chromosome 5
Location:2423263
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre05.g238650 PHC5 (1 of 24) IPR003882//IPR024616 - Pistil-specific extensin-like protein // Pherophorin; Pherophorin-chlamydomonas homolog 5 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATCTTACCGCTGACACTCTCCTTCCCTGCCCCGCCCCTTCCCCGCTTGC
Internal bar code:ACGTTTTTTGATCAAGCAGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:342
LEAP-Seq percent confirming:54.1667
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:CTCGTTTGCCATCTTAGCGC
Suggested primer 2:GTTCGTGGAGTGCAGAGTGA