Insertion junction: CLIP2.077332_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.077332
Chromosome:plastome
Location:100270
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802306 2716993,ChreCp042,rpoB1 (1 of 2) K03043 - DNA-directed RNA polymerase subunit beta (rpoB); RNA polymerase beta subunit I 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAGGGTTAGACAAAGAAACATGACTCACTGTCTATATGTTAAATATTT
Internal bar code:GAGCATCTTGCCCTCATAGTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:116
LEAP-Seq percent confirming:36.3636
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:AATCCACACTGGCCGGTAAG
Suggested primer 2:GGTTTGAGCTAATAGGGCCGT