Insertion junction: CLIP2.077335_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.077335
Chromosome:chromosome 3
Location:2676435
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g160850 (1 of 2) PTHR35100:SF1 - F15H11.13 PROTEIN 5'UTR
Cre03.g160900 (1 of 1) PF07714//PF12796//PF13857 - Protein tyrosine kinase (Pkinase_Tyr) // Ankyrin repeats (3 copies) (Ank_2) // Ankyrin repeats (many copies) (Ank_5) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGTCCATCTCGTGTAATTTTATCTAGTGATGGATGAGTATGTCAACCCT
Internal bar code:AGTGCCCTTGGTGATGTCCCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:536
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGTGCTTGTAGGGACGA
Suggested primer 2:TCTGCGAGTATGGACGATGC