Insertion junction: CLIP2.077359_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.077359
Chromosome:chromosome 13
Location:902599
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g567700 HAV,HAV2 Histone H2A variant; (1 of 30) K11251 - histone H2A (H2A) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTACACGGTCCTCTCGAAGTCACACGTCGGGCTTCTCTCTACAACCGC
Internal bar code:CTCTTCCTTGCTTCGTCTACGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2377
LEAP-Seq percent confirming:85.0
LEAP-Seq n confirming:51
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:60

Suggested primers for confirmation by PCR

Suggested primer 1:TTGACAATCTCGCGACTGCT
Suggested primer 2:CTGGGAAACGGTTTGCACAG