Insertion junction: CLIP2.077381_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.077381
Chromosome:plastome
Location:78944
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802296 2717032,ycf8,psbT,ChreCp031 photosystem II protein T; (1 of 1) K02718 - photosystem II PsbT protein (psbT) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGCAAAAGTATCTATTGAAATTACCTTAAAATGAACATTGCACTAAAAC
Internal bar code:CAACTTTTTAATGTAGCTCACG

Confirmation - LEAP-Seq

LEAP-Seq distance:81
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:TCGTTCGTCGTATGCCAACA
Suggested primer 2:GCGGTACCACTGCCACTAAA