Insertion junction: CLIP2.077456_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.077456
Chromosome:chromosome 9
Location:2876987
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre09.g390678 (1 of 1) K17500 - integrin-linked kinase-associated serine/threonine phosphatase 2C [EC:3.1.3.16] (ILKAP) intron
Cre09.g801025 3'UTR
lncRNA_TCONS_00128634 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCGCAAAAGCACAACCAAGGTCCCTCACACTCTCACCGCTCGGCCCCAA
Internal bar code:AGGTTTGCTTGATAAGATGCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:418
LEAP-Seq percent confirming:96.2963
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:AATCGTTCATGGTCGTGGCT
Suggested primer 2:CCCCGTGGGTTCTGAAATGA