Insertion junction: CLIP2.077476_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.077476
Chromosome:plastome
Location:124354
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802314 2717041,ChreCp050,atpA (1 of 1) K02111 - F-type H+-transporting ATPase subunit alpha (ATPF1A, atpA); ATP synthase CF1 alpha chain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCACCTTTACCATCAACTGGACGAGCTAAACCGTCAACTACACGACCTA
Internal bar code:GAACCGTCCCGTGTGAGTCCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:133
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:TGGCAATGCGTACTCCAGAA
Suggested primer 2:AAACGAGCACCACGAGCTAA