Insertion junction: CLIP2.077501_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.077501
Chromosome:chromosome 3
Location:5212110
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre03.g181750 intron
lncRNA_TCONS_00234913 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTATCTTCTACATGCCTGTACAGCCATGGCGGACGCTCCTTCCAGCGACT
Internal bar code:TGTAAGCTTATGCAGTCAGAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:3632
LEAP-Seq percent confirming:29.2453
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:75
LEAP-Seq n unique pos:106

Suggested primers for confirmation by PCR

Suggested primer 1:GGCTTGCTCCGAGTACTTGT
Suggested primer 2:CACCGAGCAGACACAGATGT