Insertion junction: CLIP2.077556_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.077556
Chromosome:chromosome 9
Location:4310511
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre09.g801053 (1 of 30) PF00078//PF03372 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCCGGCTG
Internal bar code:TACTGTACTCGTTAGATGCAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:41
LEAP-Seq percent confirming:4.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:24
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:TCTGCCCTGCAAGCTAAGAC
Suggested primer 2:CACTCCAGGAAGATGTGCGT