Insertion junction: CLIP2.077645_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.077645
Chromosome:plastome
Location:59688
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802287 ChreCp023,atpE,2716972 ATP synthase epsilon chain; (1 of 1) K02114 - F-type H+-transporting ATPase subunit epsilon (ATPF1E, atpC) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGGAATATTCATATCCACCGACAAAAGGTTCTAGTGTGATTACCATAAG
Internal bar code:GTCACTTTAAGGCGTTTCTGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:168
LEAP-Seq percent confirming:37.931
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CAGAAAGGACGCTCTGGTGT
Suggested primer 2:TTATCACCGCAGCTTTGGGT