Insertion junction: CLIP2.077650_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.077650
Chromosome:chromosome 12
Location:2766000
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g504100 PHX20,NFU2,PFH20 Putative prolyl 4-hydroxylase; (1 of 26) 1.14.11.2 - Procollagen-proline dioxygenase / Protocollagen hydroxylase 3'UTR
Cre12.g504150 NFU2,NIFU2 Iron-sulfur cluster assembly protein; (1 of 1) PTHR11178//PTHR11178:SF1 - IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED // NFU1 IRON-SULFUR CLUSTER SCAFFOLD HOMOLOG, MITOCHONDRIAL 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGGATCGCTGTGTGCTTGTGAAATTGCTGGTTGTATATCCACTTTGTAT
Internal bar code:CTTTTTCAATAGGTGATAATAC

Confirmation - LEAP-Seq

LEAP-Seq distance:4866
LEAP-Seq percent confirming:98.913
LEAP-Seq n confirming:91
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:92

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGATTTGGCCCCGTACCT
Suggested primer 2:CACACACACACTGAAGCTGC