Insertion junction: CLIP2.077666_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.077666
Chromosome:chromosome 15
Location:825013
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre15.g639056 (1 of 5) IPR000104//IPR001214 - Antifreeze protein, type I // SET domain 3'UTR
Cre15.g640350 CLR4,OPR97,NCL4 Nuclear Control of chloroplast Like 4 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGAGGCAGCCTGCGGCACGAAGCGGGCGGTGCGAACTGGATGTCAACGC
Internal bar code:AATTACAAAGATCAGGGATTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:4922
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:64
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:64

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGAGGTGGGCAGGTTTGT
Suggested primer 2:TGGGACAGGAGGATGAGGAG