Insertion junction: CLIP2.077682_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.077682
Chromosome:plastome
Location:174682
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802329 ChreCp064,psbD,2716961 (1 of 1) K02706 - photosystem II P680 reaction center D2 protein (psbD); photosystem II protein D2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAACATGAAGAAGTGAAGCCAACGTTTGTTAGAGAAAGCAACACCGAAG
Internal bar code:TGATCCAATTGTGTGGACGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:85
LEAP-Seq percent confirming:31.25
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TGACTGGCTTCGTCAAGACC
Suggested primer 2:TTCGTGTCGCACCCACTTAA