Insertion junction: CLIP2.077721_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.077721
Chromosome:plastome
Location:73423
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802293 orf202 Wendy transposon 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCAATAGGATACCCGATTAGCTCAGTCGTATTGGTAGCCGTCGCGTTTAT
Internal bar code:AATTGCCCAATGAAGGGGTTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:55
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:TAAAACACAAGCTGCACCGC
Suggested primer 2:TGGCTTGATTGACGTCGTCA