Insertion junction: CLIP2.077786_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.077786
Chromosome:chromosome 8
Location:1458136
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g364700 (1 of 7) PF00076//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCCTTGCATAGAAGTCATAGTCAATTTCACATAACTGTTCGGCCTTAGG
Internal bar code:ATAGGTAACAGGCCTAGCCAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1295
LEAP-Seq percent confirming:16.3265
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:41
LEAP-Seq n unique pos:49

Suggested primers for confirmation by PCR

Suggested primer 1:AGTGGTGGTGATCTGCCATG
Suggested primer 2:GCAGCAAGCAAACTGACCTC