Insertion junction: CLIP2.077854_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.077854
Chromosome:chromosome 12
Location:4213505
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g518000 SCA2,SECA2 (1 of 1) PF01043//PF07517 - SecA preprotein cross-linking domain (SecA_PP_bind) // SecA DEAD-like domain (SecA_DEAD); Chloroplast-associated SecA protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTGGCGGTGCCCTTGGACAGCCTGCAGCGCCACCGCAAGGAGGATGTGG
Internal bar code:CCCAACGGGAAACTATAGGACG

Confirmation - LEAP-Seq

LEAP-Seq distance:1327
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GGGCTTCGACTGACCAAAGA
Suggested primer 2:GGCTTTGCTTTCTGAGTGCC