Insertion junction: CLIP2.077905_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.077905
Chromosome:chromosome 17
Location:3226541
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g721600 (1 of 1) K12847 - U4/U6.U5 tri-snRNP-associated protein 2 (USP39, SAD1) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGGGTGACCGGGGACCGTGCCAGGTCGTGGCCGATGGAGGGCCCCGCG
Internal bar code:GTTTCCTACAATCGTGCACGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1503
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:GTTTGGGAACGTGACAAGGC
Suggested primer 2:GATGGGGAGAGGGTTGAAGC