Insertion junction: CLIP2.077915_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.077915
Chromosome:chromosome 3
Location:398670
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre03.g144807 MAS1 (1 of 1) 2.3.3.9 - Malate synthase / Malic-condensing enzyme; Malate synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTTGCTTGGGAACAGAGAAACCGACTACAAAACAGGTCCGGATCCCCCA
Internal bar code:ATCGATAGAATGTAATCCGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:370
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:ACACACACACACACACACCT
Suggested primer 2:ACCAGTCCCCAATCATGCAG