Insertion junction: CLIP2.077937_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.077937
Chromosome:chromosome 4
Location:1607316
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g213150 MAE13 MATE efflux family protein; (1 of 5) PTHR11206//PTHR11206:SF94 - MULTIDRUG RESISTANCE PROTEIN // DNA-DAMAGE-INDUCIBLE PROTEIN F 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGGTTTGGGTCAGCGGCTACTTGTGGTTTCCGTAGGTAAAGGTAGGTGC
Internal bar code:GTTCGTCTTATACCCACACTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:766
LEAP-Seq percent confirming:35.4839
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:20
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:TTGTGGGCAGGATGTAGCAG
Suggested primer 2:CATTAGCATTTCCGGGTGCG