Insertion junction: CLIP2.077953_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.077953
Chromosome:chromosome 1
Location:3710998
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g024200 (1 of 1) PTHR23139:SF8 - CLEAVAGE STIMULATION FACTOR 64 KILODALTON SUBUNIT 3'UTR
Cre01.g024250 HEL4 DEAH box ATP-dependent RNA helicase; (1 of 1) 1.14.13.101 - Senecionine N-oxygenase / Senecionine monooxygenase (N-oxide-forming) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGTCTGACGTGAGTCAGTGGTGTTGCGACCCGTTGTACGTATTGATTTG
Internal bar code:AATAGGGAACAGGTCTTTCTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2920
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:46
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:46

Suggested primers for confirmation by PCR

Suggested primer 1:TGCATCACATTTCCGACGGA
Suggested primer 2:ATCACGCTCTCCCTCTCCTT