Insertion junction: CLIP2.077999_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.077999
Chromosome:chromosome 1
Location:1037713
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre01.g006150 EFG9,PRFC1, PRFC1,PRF3 (1 of 1) PTHR23115//PTHR23115:SF69 - TRANSLATION FACTOR // PEPTIDE CHAIN RELEASE FACTOR 3; Putative chloroplast translation peptide-chain release factor 3 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGGTGGGACTGCTCAGGGACAGCCAGGGCCGGTGGGTAGAGGCCACGG
Internal bar code:CCTGGTGGTAAACGGCTTTAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:390
LEAP-Seq percent confirming:68.75
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GGGTTGCAAGGATGGGTACA
Suggested primer 2:GAGGTCAAGGGGTTGATGGG