Insertion junction: CLIP2.078025_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.078025
Chromosome:chromosome 12
Location:2468927
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g507400 LCS3,CGL105 (1 of 4) K01897 - long-chain acyl-CoA synthetase (ACSL, fadD); Long-chain acyl-CoA synthetase 3'UTR
Cre12.g507450 SYP4 Trans-Golgi network Qa-SNARE protein; (1 of 1) K08489 - syntaxin 16 (STX16) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACCACAAACTTGTGCACACAACTCAAGCCCATTCACAGAGTACACACAT
Internal bar code:CGGCTATATCTGAGATTGATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1385
LEAP-Seq percent confirming:47.3684
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TTCACCAGTCGCTCCTTCAC
Suggested primer 2:TTACACAGGCGTTGCGTTTG