Insertion junction: CLIP2.078027_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.078027
Chromosome:chromosome 14
Location:1672655
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g618800 (1 of 13) PTHR13244//PTHR32523//PTHR32523:SF8 - ZINC FINGER MYND DOMAIN CONTAINING PROTEIN 10 // FAMILY NOT NAMED // PHYTOL KINASE 1, CHLOROPLASTIC 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTATGAGTTGGAACGCCCAATCTCGGGTTTCGGCCCCGGATGGACCCGCC
Internal bar code:AATCTTTCGCAGACATGGAGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1705
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCCCCTGTACGGTACTGA
Suggested primer 2:CGGCTGCAACAATCAGATCG