Insertion junction: CLIP2.078043_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.078043
Chromosome:plastome
Location:11909
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802267 ChreCp005,2716979,tufA elongation factor 1-alpha; (1 of 1) PTHR23115//PTHR23115:SF146 - TRANSLATION FACTOR // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCATATTTATCTAAAGTTTCACGTACTTCTAATTCAACTAATTCAAGAAG
Internal bar code:GCAGCGTGTTATTGTTGTAATA

Confirmation - LEAP-Seq

LEAP-Seq distance:1367
LEAP-Seq percent confirming:13.3333
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:26
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCTGGTGGTTCAGTTGGT
Suggested primer 2:CCAAAGGGGACGTCCGTTAA