Insertion junction: CLIP2.078075_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.078075
Chromosome:plastome
Location:18926
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802270 petB,ChreCp008,2717017 cytochrome b6; (1 of 1) K02635 - cytochrome b6 (petB) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGTTACAATTTTAACCGCCCAGTAACCAACTTGGTCCCATGGTAATGAA
Internal bar code:TAGTAATGCGAATAATACGTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:169
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCTTCGGGCAACTAAAGT
Suggested primer 2:CCAGTTCCATCACGAAGGCT