Insertion junction: CLIP2.078078_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.078078
Chromosome:chromosome 5
Location:1685365
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre05.g800544 (1 of 30) PF00078//PF03372 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCGAGTGCTGGGACGGGGACGCATACGACTGCAGTTCTCTCGCCGGCGT
Internal bar code:GGGCCTAATGTGTAGCCACGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:118
LEAP-Seq percent confirming:90.625
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:TCTGCCCTGCAAGCTAAGAC
Suggested primer 2:CACTCCAGGAAGATGTGCGT