Insertion junction: CLIP2.078098_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.078098
Chromosome:chromosome 9
Location:4787417
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g402441 outside_mRNA
Cre09.g402478 (1 of 107) PF00069//PF07714 - Protein kinase domain (Pkinase) // Protein tyrosine kinase (Pkinase_Tyr) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCATTCTGAATGCGGCATTACAAGAAGGGGCCGTCCTATGACATATGTTA
Internal bar code:TTGGGGTGTAAGGCTCAGCTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:928
LEAP-Seq percent confirming:88.2353
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:TGGGACAGATGAAGTGTGGC
Suggested primer 2:CTGCGGCGACTTATCCAGAT