Insertion junction: CLIP2.078130_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.078130
Chromosome:chromosome 3
Location:1428489
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g151000 SEX4,DSP8 Laforin glucan phosphatase, chloroplastic; (1 of 1) PTHR10343//PTHR10343:SF58 - 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT // PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGTCTAATAAATTAAACTTATTGGTGGTCTGTCCCAGCCGAGTTTTGGC
Internal bar code:TCGATCTGGATACAGTTAACTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1266
LEAP-Seq percent confirming:14.2857
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CTGTGTCACCTCACCTGTCC
Suggested primer 2:TAGGATGAAGGACGCCAGGA