Insertion junction: CLIP2.078167_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.078167
Chromosome:chromosome 3
Location:6428894
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g192950 (1 of 4) 2.7.11.13 - Protein kinase C / PKC 3'UTR
Cre03.g193000 HAD5 Halo-acid dehalogenase-like hydrolase; (1 of 1) 3.1.3.29 - N-acylneuraminate-9-phosphatase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAGCGCACTAGGACCATGCCGGATCAAGCCTCACCAGTTTCGTACACG
Internal bar code:GTTCTTCGCTGGCTGTGCTCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1469
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GCATCAGGATAGTCGGCGAA
Suggested primer 2:TGATTCGGTTTCTCACGCCA