Insertion junction: CLIP2.078207_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.078207
Chromosome:plastome
Location:99381
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802306 2716993,ChreCp042,rpoB1 (1 of 2) K03043 - DNA-directed RNA polymerase subunit beta (rpoB); RNA polymerase beta subunit I CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCAATACGTAACCATGTACCACGATTACAAATTAAATCTGCAAAATAAC
Internal bar code:CTTATGCGTGCATAGTGTCGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:108
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CTTACCGGCCAGTGTGGATT
Suggested primer 2:ACGTTGCTTAGACGAACGGA