Insertion junction: CLIP2.078207_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.078207
Chromosome:plastome
Location:200432
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802335 rpoC1,ChreCp069,2717049 (1 of 2) K03046 - DNA-directed RNA polymerase subunit beta' (rpoC); RNA polymerase beta' chain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGACTCGAACTTTTAGTGTTTAAAAATAATGATTGAAAAGGATTTAAAC
Internal bar code:TCTTCGGCTTCGAAAAACCGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:161
LEAP-Seq percent confirming:7.14286
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:26
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:AGTTCGACTTTGTAGCCCCG
Suggested primer 2:CTCCTTTTTGGGCAATCGCA