Insertion junction: CLIP2.078232_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.078232
Chromosome:chromosome 2
Location:3170376
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre02.g096601 (1 of 1) IPR001440//IPR013026//IPR019734 - Tetratricopeptide repeat 1 // Tetratricopeptide repeat-containing domain // Tetratricopeptide repeat 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCTGCTGCAGCCGGCCGCCAAGCGAGCTGTGCCGCGCGCGTTTGCCTCG
Internal bar code:TGTTGGTTCATTGTTACCCTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:363
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:AGGGAGGAACAGAGGGCTAG
Suggested primer 2:AGCAGGAGAGGAGGAGGAAG