Insertion junction: CLIP2.078243_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.078243
Chromosome:chromosome 8
Location:1412907
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g364400 (1 of 6) IPR001471//IPR016177 - AP2/ERF domain // DNA-binding domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GATTATAAGCCATGCATTTTGGGGGTGGGCACGCGCCGAGCGACTAAGTA
Internal bar code:GTTCAGCTGGGGTTCGGCTGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2195
LEAP-Seq percent confirming:52.6316
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TGCATGCTGAACCCTTTTGC
Suggested primer 2:CGCGGCAACAATTACCTACG