Insertion junction: CLIP2.078274_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.078274
Chromosome:chromosome 16
Location:287953
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g694201 (1 of 1) PTHR12461//PTHR12461:SF46 - HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED // SUBFAMILY NOT NAMED; Cupin- Jumonji-like protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGCAACACCGAAATCGCGAGGCCCGCGCCATCCTGCGCCATCCCAGGAC
Internal bar code:GGGAGTCTCTGTGTCTAGAGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1129
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CCTTGCTGTTTGCGTTTCCA
Suggested primer 2:CATGGCAACGCTATTGACCG