Insertion junction: CLIP2.078305_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.078305
Chromosome:plastome
Location:62665
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802290 ChreCp026,2716975,psbM photosystem II protein M; (1 of 1) K02714 - photosystem II PsbM protein (psbM) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGTCGCAAGGGAGCAAAAGGCAAAGCAGTAACTTATTAGTCTGTTTCC
Internal bar code:TCTCACCTCGAATATGGGTCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:232
LEAP-Seq percent confirming:52.1739
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:ATGTGATGCCTCGCCTATCG
Suggested primer 2:TTGGTTGGACACAGGTTGCT