Insertion junction: CLIP2.078325_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.078325
Chromosome:chromosome 5
Location:2965448
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g230600 UVR8 Ultraviolet-B receptor 8; (1 of 1) PTHR22870//PTHR22870:SF193 - REGULATOR OF CHROMOSOME CONDENSATION // SUBFAMILY NOT NAMED 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGGGCGAGACTGCCCCATTGCTGTGAAACGGTCGCACTGCAAGCGAAAC
Internal bar code:GTTCCAAAAGGTGACTTAGCCT

Confirmation - LEAP-Seq

LEAP-Seq distance:1183
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCCTCCTGATGGTCTCCA
Suggested primer 2:ATGGGCAGGTCATTCAGGTG