Insertion junction: CLIP2.078333_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.078333
Chromosome:chromosome 7
Location:999636
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g319500 (1 of 2) 2.3.2.15 - Glutathione gamma-glutamylcysteinyltransferase / Phytochelatin synthase 5'UTR
Cre07.g319550 (1 of 1) PF10442 - FIST C domain (FIST_C) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGCAAAATTAATGCGAGCGTGGCATGAGTCCATGCAATGTGGAATTTTT
Internal bar code:TGTTTCGCCGCCCAATAACTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:598
LEAP-Seq percent confirming:16.6667
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:20
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:CCCGGATTTGCGTTGCATAG
Suggested primer 2:TTGGCTTGCGAGAGATGTGT