Insertion junction: CLIP2.078349_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.078349
Chromosome:chromosome 7
Location:357770
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g314650 RECA1,RECA,EZY19 Chloroplast RecA recombination protein; (1 of 1) PTHR22942:SF1 - MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCTGCAAGAAGGCGATAGCCCGCCCTCAACTGCCCCTTCCAAAACAAGC
Internal bar code:TGACTTCTTAAGTCTTGTCGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1938
LEAP-Seq percent confirming:97.5
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGGTAGGGCTATGCGGAG
Suggested primer 2:AAAGGGTTCATGCACGTTGC