Insertion junction: CLIP2.078373_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.078373
Chromosome:chromosome 9
Location:5704101
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g410450 ROC15,ROC74 Rhythm Of Chloroplast 15; (1 of 4) IPR001005//IPR006447//IPR009057//IPR017930 - SANT/Myb domain // Myb domain, plants // Homeodomain-like // Myb domain outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAACCTTCGTTCAACTAGCCCACAGTCCCATTTAGTTTGCGATTCTCGC
Internal bar code:AAACGAGCGATTGGTTGATAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:4291
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:TGCGATGGTTGTTGTTGCTG
Suggested primer 2:CTGGAGGTGTCGGCAGAAAT