Insertion junction: CLIP2.078382_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.078382
Chromosome:chromosome 3
Location:3347440
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g166201 (1 of 2) PTHR10174//PTHR10174:SF113 - RETINALDEHYDE BINDING PROTEIN-RELATED // RETINALDEHYDE-BINDING PROTEIN 1 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGAGGGGGCGTAGCTGCGGACGATAGGCAAGCCGTTGGGGGCTTTGGAG
Internal bar code:CCTTTGAGTTGACGATGCTCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1946
LEAP-Seq percent confirming:39.1304
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:TACGACTCTCCATCTGCCCA
Suggested primer 2:CTCCCCCTCATTCCCTCTCA