Insertion junction: CLIP2.078423_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.078423
Chromosome:plastome
Location:190450
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802332 ChreCp067,2717046,psaC photosystem I iron-sulfur center; (1 of 1) K02691//K05575 - photosystem I subunit VII (psaC) // NAD(P)H-quinone oxidoreductase subunit 4 (ndhD) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGAATAAAGCCGTTTTTTACACCGGCACTGCCTTTGGCTGGAAGAGTCTT
Internal bar code:TATTGACCTTTCATCTGCGCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:71
LEAP-Seq percent confirming:11.1111
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:CTCCACGCACTGAAGACTGT
Suggested primer 2:TTACGCTGTGTGGTCACCTC