Insertion junction: CLIP2.078432_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.078432
Chromosome:chromosome 8
Location:1120347
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g362682 (1 of 781) IPR000104 - Antifreeze protein, type I 3'UTR
Cre08.g362700 SMM30 (1 of 8) 3.4.24.71 - Endothelin-converting enzyme 1 / ECE-1; S-adenosyl-L-methionine-dependent methyltransferase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACGTCAGCGCCTCAGCGGCACAGCCAGTCAGCCAGCTCCGTCGGTCCGT
Internal bar code:GGTCTCCATCTACTAGAGTCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:286
LEAP-Seq percent confirming:48.4848
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:17
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:CTGCGCTGTGTTTGTGATCC
Suggested primer 2:GCTGCTGTTGCGTTGTGTTA