Insertion junction: CLIP2.078438_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.078438
Chromosome:chromosome 12
Location:2621420
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g506000 IC69,ODA6,ODA-IC2,DIC2,IC70,IC2 (1 of 1) K11143 - dynein intermediate chain 2, axonemal (DNAI2); Flagellar Outer Arm Dynein Intermediate Chain 2 5'UTR
Cre12.g506050 (1 of 1) K14408 - cleavage stimulation factor subunit 3 (CSTF3, RNA14) outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTAAAGGTGTAGCATGTCAAGGCTGCGAGCAATTCAGAGAAAGTCACGA
Internal bar code:GGGGTCTCGATCATGGGCGTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1600
LEAP-Seq percent confirming:73.8095
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:TGCTTTCAGCTCCAAAACGC
Suggested primer 2:TCCTGGCTGCTTAGCTCCTA